Apeep is a set of tools to process images produced by the In Situ Ichthyoplankton Imaging System (ISIIS), initially developed by Jean-Olivier Irisson. I then contributed to its development by integrating intelligent segmentation as described in my paper published in Frontiers in Marine Science: Content-Aware Segmentation of Objects Spanning a Large Size Range: Application to Plankton Images.
My contributions are probably not coded in the best possible way (in my defence, I am originally a biologist), but it works, and we were able to deploy and run the pipeline on three different supercomputers. It took ~250h of GPU computing to process the 16 TB of data from the VISUFRONT campaign.